Revisiting Pfam alignments: using defaultdicts, chains …

I haven’t posted in a while, so let’s get back to the last topic covered here, merging sequences from Pfam alignments. Two comments to my last post suggested some changes to the original code, and both comments made…

Revisiting Pfam alignments: using defaultdicts, chains …

python.genedrift.org 3 comments

Paulo Nuin: Merging sequences from a Pfam alignment: using sets

python.genedrift.org 3 comments

A colleague came with a “problem”: what would be the most efficient way to merge Pfam alignments? He had FASTA files containing sequences and he wanted to find identical IDs in two files and merge the related…

Paulo Nuin: Merging sequences from a Pfam alignment: using sets, part II

python.genedrift.org 2 comments

Mike and Luke left comments and suggestions on how to attack the problem from the previous entry. I copied their comments here in order to maintain code formatting a little bit better (comments do not have code…

Beginning Python for Bioinformatics: Still on merging Pfam alignments …

python.genedrift.org 0 comments

One of the things I like about Python and the Python community is the search for the making code simple and clear. Tal left a comment in the last post about merging Pfam alignment sequences suggesting another approach…

Code repository

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I am transferring the current repository, which is “hosted” in a static page on th blog, to a Git repository on github.com. I am posting soon a quick guide on how to access it. I am also making all relevant entries…

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